PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0167.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 299aa    MW: 32847.7 Da    PI: 5.1772
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38e-36101002101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d+++++++sws++g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fkkg+ 
  Kaladp0060s0167.1.p  10 FLTKTFQLVDDRSTDDVVSWSDDGSTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANEHFKKGQA 90 
                          9***************************************************************9999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          ell++i+r+k
  Kaladp0060s0167.1.p  91 ELLTEIRRRK 100
                          ********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-37493IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-33699IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTVRSAPAPF LTKTFQLVDD RSTDDVVSWS DDGSTFVVWK TAEFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANEHFKKGQA ELLTEIRRRK AVIASQAAGK ATGGGSSPSN  120
SGEDLGSTST SSPGSADEIV MQLTGLSDEN EKLKKDNVKL NSELARTKKQ CEELVGFVAR  180
YMKVGVEEID GIMKQQGAAL SSSSQPKTIV AISDDDEDEE AVGGEEEEEE KVKIDSLKLF  240
GVWLKGEKGT KNKRCRDEAA LPHSDNPITN GDSSGNKKMK NNVEFDASWM KMSTVVPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2559925129Heat shock factor protein 1
5d5v_B3e-2559925129Heat shock factor protein 1
5d5v_D3e-2559925129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277765.21e-100PREDICTED: heat shock factor protein HSF24
SwissprotP223359e-98HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLD7SVY01e-100D7SVY0_VITVI; Putative uncharacterized protein
STRINGVIT_07s0031g00670.t011e-100(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-83heat shock factor 4